Projects

CausalPath analyzes molecular profiles (phosphoproteomics, transcriptomics, etc.) to infer causal biological mechanisms by integrating prior knowledge from pathway databases. It helps explain experimental observations in the context of known biology.

Implements rank-based methods (GSEA, VIPER) within a webserver to predict transcription factor (TF) activity from gene expression data. Provides biologists with an accessible tool to infer regulatory changes without requiring programming expertise.